Transcript: ENST00000612372.4 TYW1B-202

Description

tRNA-yW synthesizing protein 1 homolog B [Source:HGNC Symbol;Acc:HGNC:33908]

Gene Synonyms

LINC00069, MGC87315, NCRNA00069, RSAFD2

Location

Chromosome 7: 72,558,744-72,828,174 reverse strand.

About this transcript

This transcript has 12 exons, is annotated with 12 domains and features, is associated with 118649 variant alleles and maps to 458 oligo probes.

Gene

This transcript is a product of gene ENSG00000277149.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000620995.5	TYW1B-203	3117	668aa	ENSP00000482502.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS69309	Q6NUM6-1	NM_001145440.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000612372.4	TYW1B-202	1543	471aa	ENSP00000480534.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WWV6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000610600.1	TYW1B-201	1086	325aa	ENSP00000484480.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087X1V1	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 12, Coding exons: 12, Transcript length: 1,543 bps, Translation length: 471 residues

Transcript Support Level (TSL)

TSL:1

Version

ENST00000612372.4

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000612372.4 TYW1B-202

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Transcript: ENST00000612372.4 TYW1B-202

Summary

About Us

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