Transcript: ENST00000646641.1 S1PR2-201

Description

sphingosine-1-phosphate receptor 2 [Source:HGNC Symbol;Acc:HGNC:3169]

Gene Synonyms

AGR16, DFNB68, EDG5, GPCR13, H218

Location

About this transcript

This transcript has 2 exons, is annotated with 40 domains and features, is associated with 5550 variant alleles and maps to 367 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000646641.1	S1PR2-201	3643	353aa	ENSP00000496438.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12229	A0A024R7B2 O95136	NM_004230.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 3,643 bps, Translation length: 353 residues

MANE

This MANE Select transcript contains ENSP00000496438 and matches to NM_004230.4 and NP_004221.3

Uniprot

This transcript corresponds to the following Uniprot identifiers: O95136

CCDS

This transcript is a member of the Human CCDS set: CCDS12229

Version

ENST00000646641.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Annotation Attributes

5' standard supported extension [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.