Transcript: ENST00000637493.2 FAM240B-201

Description

family with sequence similarity 240 member B [Source:HGNC Symbol;Acc:HGNC:53430]

Location

Chromosome 9: 38,694,266-38,720,133 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 4 domains and features, is associated with 11309 variant alleles and maps to 107 oligo probes.

Gene

This transcript is a product of gene ENSG00000283329.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000637493.2	FAM240B-201	862	78aa	ENSP00000490097.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94410	A0A1B0GVZ2	NM_001394922.1	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000637691.1	FAM240B-202	966	78aa	ENSP00000490707.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS94410	A0A1B0GVZ2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 862 bps, Translation length: 78 residues

MANE

This MANE Select transcript contains ENSP00000490097 and matches to NM_001394922.1 and NP_001381851.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A0A1B0GVZ2

CCDS

This transcript is a member of the Human CCDS set: CCDS94410

Transcript Support Level (TSL)

TSL:5

Version

ENST00000637493.2

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000637493.2 FAM240B-201

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Transcript: ENST00000637493.2 FAM240B-201

Summary

About Us

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