Transcript: ENST00000665569.1 SPANXA2-OT1-204

Description

SPANXA2 overlapping transcript 1 [Source:HGNC Symbol;Acc:HGNC:31683]

Gene Synonyms

CXORF18, FLJ36186

Location

About this transcript

This transcript has 2 exons, is associated with 10316 variant alleles and maps to 4 oligo probes.

Gene

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000662492.1	SPANXA2-OT1-202	830	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000664367.1	SPANXA2-OT1-203	5479	No protein	-	lncRNA	-	-
ENST00000665569.1	SPANXA2-OT1-204	5439	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000666501.1	SPANXA2-OT1-206	1982	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000666172.1	SPANXA2-OT1-205	1884	No protein	-	lncRNA	-	-
ENST00000622372.1	SPANXA2-OT1-201	1686	No protein	-	lncRNA	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,

Summary

Statistics

Exons: 2, Coding exons: 0, Transcript length: 5,439 bps,

Version

ENST00000665569.1

Type

LncRNA

Annotation Method

Transcript which was created by the HAVANA-Ensembl manually supervised computational pipeline (TAGENE) for long-read sequence data.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.