Transcript: ENST00000560623.1 CTXN2-AS1-202

Description

CTXN2 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:55426]

Location

Chromosome 15: 48,189,387-48,191,691 reverse strand.

About this transcript

This transcript has 4 exons, is associated with 888 variant alleles and maps to 156 oligo probes.

Gene

This transcript is a product of gene ENSG00000259235.2 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	RefSeq Match	Flags
ENST00000560339.2	CTXN2-AS1-201	2694	No protein	-	lncRNA	-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000561094.2	CTXN2-AS1-203	1776	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000560623.1	CTXN2-AS1-202	481	No protein	-	lncRNA	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 4, Coding exons: 0, Transcript length: 481 bps,

Transcript Support Level (TSL)

TSL:4

Version

ENST00000560623.1

Type

LncRNA

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000560623.1 CTXN2-AS1-202

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Transcript: ENST00000560623.1 CTXN2-AS1-202

Summary

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