Transcript: ENST00000535362.3 TPRX2-201

Description

tetrapeptide repeat homeobox 2 [Source:HGNC Symbol;Acc:HGNC:32175]

Gene Synonyms

TPRX2P, TPRX2P1

Location

Chromosome 19: 47,859,235-47,861,721 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 12 domains and features, is associated with 1464 variant alleles and maps to 96 oligo probes.

Gene

This transcript is a product of gene ENSG00000259009.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000535362.3	TPRX2-201	1127	301aa	ENSP00000514106.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS92655	P0DV77	NM_001397347.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000699059.1	TPRX2-202	942	81aa	ENSP00000514105.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TPE6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000699383.1	TPRX2-203	523	117aa	ENSP00000514348.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS92656	A0A8V8TNP4	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 1,127 bps, Translation length: 301 residues

MANE

This MANE Select transcript contains ENSP00000514106 and matches to NM_001397347.2 and NP_001384276.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: P0DV77

CCDS

This transcript is a member of the Human CCDS set: CCDS92655

Transcript Support Level (TSL)

TSL:NA

Version

ENST00000535362.3

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000535362.3 TPRX2-201

Summary

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Transcript: ENST00000535362.3 TPRX2-201

Summary

About Us

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