Transcript: ENST00000606576.1 LCE1C-201

Description

late cornified envelope 1C [Source:HGNC Symbol;Acc:HGNC:29464]

Gene Synonyms

LEP3

Location

Chromosome 1: 152,805,226-152,806,628 reverse strand.

About this transcript

This transcript has 3 exons, is annotated with 6 domains and features, is associated with 790 variant alleles and maps to 148 oligo probes.

Gene

This transcript is a product of gene ENSG00000197084.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000607093.2	LCE1C-202	718	118aa	ENSP00000475270.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS1026	Q5T751	NM_178351.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000606576.1	LCE1C-201	211	54aa	ENSP00000476034.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		U3KQM4	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Summary

Statistics

Exons: 3, Coding exons: 2, Transcript length: 211 bps, Translation length: 54 residues

Transcript Support Level (TSL)

TSL:3

Incomplete CDS

3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete

Version

ENST00000606576.1

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000606576.1 LCE1C-201

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Transcript: ENST00000606576.1 LCE1C-201

Summary

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