Transcript: ENST00000639838.1 SMIM23-202

Description

small integral membrane protein 23 [Source:HGNC Symbol;Acc:HGNC:34440]

Gene Synonyms

C5ORF50, LOC644994

Location

Chromosome 5: 171,785,866-171,796,126 forward strand.

About this transcript

This transcript has 8 exons, is annotated with 1 domain and feature, is associated with 4372 variant alleles and maps to 174 oligo probes.

Gene

This transcript is a product of gene ENSG00000185662.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000523047.4	SMIM23-201	622	172aa	ENSP00000430818.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS87347	A6NLE4	NM_001289970.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000639838.1	SMIM23-202	1319	172aa	ENSP00000490990.1	Nonsense mediated decay	CCDS87347	A6NLE4	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000640082.1	SMIM23-203	790	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,

Summary

Statistics

Exons: 8, Coding exons: 4, Transcript length: 1,319 bps, Translation length: 172 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NLE4

CCDS

This transcript is a member of the Human CCDS set: CCDS87347

Transcript Support Level (TSL)

TSL:5

Version

ENST00000639838.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000639838.1 SMIM23-202

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Transcript: ENST00000639838.1 SMIM23-202

Summary

About Us

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