Transcript: ENST00000687571.1 SDR42E2-204

Description

short chain dehydrogenase/reductase family 42E, member 2 [Source:HGNC Symbol;Acc:HGNC:35414]

Location

Chromosome 16: 22,162,510-22,187,595 forward strand.

About this transcript

This transcript has 10 exons, is associated with 10287 variant alleles and maps to 187 oligo probes.

Gene

This transcript is a product of gene ENSG00000183921.8 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000602312.3	SDR42E2-201	2722	422aa	ENSP00000473474.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS92125	A6NKP2	NM_001394319.2	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000686682.1	SDR42E2-203	2359	515aa	ENSP00000509391.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8I5KWA0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000687571.1	SDR42E2-204	2460	340aa	ENSP00000509796.1	Nonsense mediated decay		A0A8I5KQB5	-	-
ENST00000684942.1	SDR42E2-202	1960	378aa	ENSP00000508835.1	Nonsense mediated decay		A0A8I5QKM4	-	-

Summary

Statistics

Exons: 10, Coding exons: 3, Transcript length: 2,460 bps, Translation length: 340 residues

Version

ENST00000687571.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported partial [Definitions]

Transcript: ENST00000687571.1 SDR42E2-204

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Transcript: ENST00000687571.1 SDR42E2-204

Summary

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