Transcript: ENST00000332432.9 MARCHF11-201

Description

membrane associated ring-CH-type finger 11 [Source:HGNC Symbol;Acc:HGNC:33609]

Gene Synonyms

MARCH-XI, MARCH11, RNF226

Location

Chromosome 5: 16,067,139-16,179,791 reverse strand.

About this transcript

This transcript has 4 exons, is annotated with 18 domains and features, is associated with 46815 variant alleles and maps to 275 oligo probes.

Gene

This transcript is a product of gene ENSG00000183654.9 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000332432.9	MARCHF11-201	1757	402aa	ENSP00000333181.7	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47192	A6NNE9-1	NM_001102562.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000507111.1	MARCHF11-203	584	54aa	ENSP00000424425.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		H0Y9K6	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000505509.1	MARCHF11-202	469	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 1,757 bps, Translation length: 402 residues

MANE

This MANE Select transcript contains ENSP00000333181 and matches to NM_001102562.3 and NP_001096032.1

Uniprot

This transcript corresponds to the following Uniprot identifiers: A6NNE9

CCDS

This transcript is a member of the Human CCDS set: CCDS47192

Transcript Support Level (TSL)

TSL:5

Version

ENST00000332432.9

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000332432.9 MARCHF11-201

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Transcript: ENST00000332432.9 MARCHF11-201

Summary

About Us

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