Transcript: ENST00000515291.1 C5orf46-203

Description

chromosome 5 open reading frame 46 [Source:HGNC Symbol;Acc:HGNC:33768]

Gene Synonyms

AP-64, MGC23985, SSSP1

Location

Chromosome 5: 147,901,308-147,906,538 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 8 domains and features, is associated with 2231 variant alleles and maps to 173 oligo probes.

Gene

This transcript is a product of gene ENSG00000178776.5 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000318315.5	C5orf46-201	528	87aa	ENSP00000315370.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS34267	Q6UWT4-1	NM_206966.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000515291.1	C5orf46-203	573	72aa	ENSP00000425984.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6UWT4-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000510432.1	C5orf46-202	573	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 573 bps, Translation length: 72 residues

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q6UWT4

Transcript Support Level (TSL)

TSL:1

Version

ENST00000515291.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000515291.1 C5orf46-203

Summary

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Transcript: ENST00000515291.1 C5orf46-203

Summary

About Us

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