Transcript: ENST00000642437.1 TSPEAR-203

Description

thrombospondin type laminin G domain and EAR repeats [Source:HGNC Symbol;Acc:HGNC:1268]

Gene Synonyms

C21ORF29, DFNB98, MGC11251, TSP-EAR

Location

Chromosome 21: 44,499,098-44,711,547 reverse strand.

About this transcript

This transcript has 13 exons, is annotated with 1 domain and feature, is associated with 107920 variant alleles and maps to 453 oligo probes.

Gene

This transcript is a product of gene ENSG00000175894.18 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000323084.9	TSPEAR-201	3958	669aa	ENSP00000321987.4	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS13712	Q8WU66-1	NM_144991.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000642437.1	TSPEAR-203	2790	38aa	ENSP00000496535.1	Nonsense mediated decay		A0A2R8YFK6	-	-
ENST00000397916.1	TSPEAR-202	2114	No protein	-	Alternatively spliced transcript of a protein coding gene for which we cannot define a CDS.Protein coding CDS not defined		-	-	TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 13, Coding exons: 2, Transcript length: 2,790 bps, Translation length: 38 residues

Version

ENST00000642437.1

Type

Nonsense mediated decay

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

Transcript: ENST00000642437.1 TSPEAR-203

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Transcript: ENST00000642437.1 TSPEAR-203

Summary

About Us

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