Transcript: ENST00000674460.1 SWSAP1-202

Description

SWIM-type zinc finger 7 associated protein 1 [Source:HGNC Symbol;Acc:HGNC:26638]

Gene Synonyms

C19ORF39, FLJ35119, SWS1AP1, ZSWIM7AP1

Location

Chromosome 19: 11,374,666-11,376,169 forward strand.

About this transcript

This transcript has 2 exons, is annotated with 9 domains and features, is associated with 969 variant alleles and maps to 219 oligo probes.

Gene

This transcript is a product of gene ENSG00000173928.4 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000674460.1	SWSAP1-202	921	250aa	ENSP00000501355.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS12259	A0A6I8PRB2	NM_175871.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1,
ENST00000312423.4	SWSAP1-201	1662	229aa	ENSP00000310008.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q6NVH7	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 921 bps, Translation length: 250 residues

MANE

This MANE Select transcript contains ENSP00000501355 and matches to NM_175871.4 and NP_787067.3

CCDS

This transcript is a member of the Human CCDS set: CCDS12259

Version

ENST00000674460.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000674460.1 SWSAP1-202

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Transcript: ENST00000674460.1 SWSAP1-202

Summary

About Us

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