Transcript: ENST00000513238.5 PARM1-202

Description

prostate androgen-regulated mucin-like protein 1 [Source:HGNC Symbol;Acc:HGNC:24536]

Gene Synonyms

CIPAR1, DKFZP564O0823, WSC4

Location

Chromosome 4: 74,933,095-75,050,115 forward strand.

About this transcript

This transcript has 3 exons, is annotated with 5 domains and features, is associated with 46024 variant alleles and maps to 408 oligo probes.

Gene

This transcript is a product of gene ENSG00000169116.11 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000307428.7	PARM1-201	5011	310aa	ENSP00000370224.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47077	Q6UWI2	NM_015393.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000513238.5	PARM1-202	4308	68aa	ENSP00000424276.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RBB6	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 3, Coding exons: 3, Transcript length: 4,308 bps, Translation length: 68 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000513238.5

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000513238.5 PARM1-202

Summary

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Transcript: ENST00000513238.5 PARM1-202

Summary

About Us

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