Transcript: ENST00000620323.1 USP12-203

Description

ubiquitin specific peptidase 12 [Source:HGNC Symbol;Acc:HGNC:20485]

Gene Synonyms

USP12L1

Location

Chromosome 13: 27,170,091-27,171,701 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 1 domain and feature, is associated with 998 variant alleles and maps to 63 oligo probes.

Gene

This transcript is a product of gene ENSG00000152484.14 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000282344.11	USP12-201	4412	370aa	ENSP00000282344.6	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS31952	O75317	NM_182488.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000612674.1	USP12-202	712	90aa	ENSP00000480395.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WWP2	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete,
ENST00000620323.1	USP12-203	349	18aa	ENSP00000478929.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A087WUU2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 2, Transcript length: 349 bps, Translation length: 18 residues

Transcript Support Level (TSL)

TSL:3

Version

ENST00000620323.1

Type

Protein coding

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: ENST00000620323.1 USP12-203

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Transcript: ENST00000620323.1 USP12-203

Summary

About Us

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