Transcript: ENST00000696751.1 IL12B-203

Description

interleukin 12B [Source:HGNC Symbol;Acc:HGNC:5970]

Gene Synonyms

CLMF, CLMF2, IL-12B, NKSF, NKSF2

Location

Chromosome 5: 159,314,780-159,330,863 reverse strand.

About this transcript

This transcript has 7 exons, is associated with 6556 variant alleles and maps to 370 oligo probes.

Gene

This transcript is a product of gene ENSG00000113302.6 Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000231228.3	IL12B-201	2364	328aa	ENSP00000231228.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4346	P29460	NM_002187.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000696750.1	IL12B-202	2257	118aa	ENSP00000512849.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8Q3WML5	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000696751.1	IL12B-203	2622	128aa	ENSP00000512850.1	Nonsense mediated decay		A0A8Q3SJ12	-	-
ENST00000696752.1	IL12B-204	858	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	-

Summary

Statistics

Exons: 7, Coding exons: 3, Transcript length: 2,622 bps, Translation length: 128 residues

Version

ENST00000696751.1

Type

Nonsense mediated decay

Annotation Method

Manual annotation (determined on a case-by-case basis) from the Havana project.

Annotation Attributes

RNA-Seq supported only [Definitions]

Transcript: ENST00000696751.1 IL12B-203

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Transcript: ENST00000696751.1 IL12B-203

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