Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Cellular component
- GO: Molecular function
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: SOX1-OT ENSG00000224243

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Description

SOX1 overlapping transcript [Source:HGNC Symbol;Acc:HGNC:42733]

Gene Synonyms

LINC00403

Location

Chromosome 13: 112,056,845-112,108,015 forward strand.

GRCh38:CM000675.2

About this gene

This gene has 8 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000658904.1	SOX1-OT-204	627	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical,
ENST00000663025.1	SOX1-OT-206	2606	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000671024.1	SOX1-OT-208	2074	No protein	-	lncRNA		-	-
ENST00000662534.1	SOX1-OT-205	1670	No protein	-	lncRNA		-	-
ENST00000666176.1	SOX1-OT-207	1561	No protein	-	lncRNA		-	-
ENST00000657728.1	SOX1-OT-203	833	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000421423.1	SOX1-OT-201	545	No protein	-	lncRNA		-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2,
ENST00000653135.1	SOX1-OT-202	512	No protein	-	lncRNA		-	-

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Summary

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