Human (GRCh38.p14)
Description

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 [Source:HGNC Symbol;Acc:HGNC:11102]

Gene Synonyms

HARP, HHARP

Location

Chromosome 2: 216,412,383-216,483,053 forward strand.

GRCh38:CM000664.2

About this gene

This gene has 27 transcripts (splice variants), 194 orthologues, 30 paralogues and is associated with 3 phenotypes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000357276.9SMARCAL1-2013201954aaENSP00000349823.4
 
Protein coding
CCDS2403Q9NZC9 NM_014140.4MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:2
ENST00000444508.6SMARCAL1-2093244954aaENSP00000398969.2
 
Protein coding
CCDS2403C9J8F8 Q9NZC9 -GENCODE basicAPPRIS P1TSL:2
ENST00000430374.6SMARCAL1-2073210954aaENSP00000405077.2
 
Protein coding
CCDS2403C9J6I8 Q9NZC9 -GENCODE basicAPPRIS P1TSL:2
ENST00000425815.6SMARCAL1-2053176954aaENSP00000394410.2
 
Protein coding
CCDS2403C9JS37 Q9NZC9 -GENCODE basicAPPRIS P1TSL:3
ENST00000358207.9SMARCAL1-2023056954aaENSP00000350940.5
 
Protein coding
CCDS2403Q9NZC9 -GENCODE basicAPPRIS P1TSL:1
ENST00000697899.1SMARCAL1-2152977876aaENSP00000513470.1
 
Protein coding
A0A8V8TLD4 -GENCODE basic
ENST00000697906.1SMARCAL1-2222826876aaENSP00000513475.1
 
Protein coding
A0A8V8TLD4 -GENCODE basic
ENST00000392128.6SMARCAL1-2032431796aaENSP00000375974.2
 
Protein coding
H7BYI2 -TSL:1CDS 5' incomplete
ENST00000427645.5SMARCAL1-206977325aaENSP00000392997.1
 
Protein coding
H7C051 -TSL:3CDS 5' and 3' incomplete
ENST00000434435.1SMARCAL1-20854492aaENSP00000402967.1
 
Protein coding
C9JP32 -TSL:4CDS 3' incomplete
ENST00000412913.1SMARCAL1-204538141aaENSP00000390248.1
 
Protein coding
C9JHQ1 -TSL:4CDS 3' incomplete
ENST00000445153.1SMARCAL1-210484161aaENSP00000400473.1
 
Protein coding
H7C1I3 -TSL:5CDS 5' and 3' incomplete
ENST00000697907.1SMARCAL1-2233054381aaENSP00000513476.1
 
Nonsense mediated decay
A0A8V8TMS6 --
ENST00000697901.1SMARCAL1-2173028381aaENSP00000513471.1
 
Nonsense mediated decay
A0A8V8TMS6 --
ENST00000697903.1SMARCAL1-2193002453aaENSP00000513472.1
 
Nonsense mediated decay
A0A8V8TLB3 --
ENST00000697905.1SMARCAL1-2212962453aaENSP00000513474.1
 
Nonsense mediated decay
A0A8V8TLB3 --
ENST00000697904.1SMARCAL1-2202926453aaENSP00000513473.1
 
Nonsense mediated decay
A0A8V8TLB3 --
ENST00000479008.1SMARCAL1-211633No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000697898.1SMARCAL1-2143700No protein-
 
Retained intron
---
ENST00000697900.1SMARCAL1-2163198No protein-
 
Retained intron
---
ENST00000697902.1SMARCAL1-2183173No protein-
 
Retained intron
---
ENST00000697908.1SMARCAL1-2243036No protein-
 
Retained intron
---
ENST00000486983.2SMARCAL1-2122240No protein-
 
Retained intron
--TSL:2
ENST00000697911.1SMARCAL1-2272046No protein-
 
Retained intron
---
ENST00000697909.1SMARCAL1-2251811No protein-
 
Retained intron
---
ENST00000697910.1SMARCAL1-2261309No protein-
 
Retained intron
---
ENST00000496037.1SMARCAL1-213542No protein-
 
Retained intron
--TSL:4