Gene: PCDHA4 ENSG00000204967

Description

protocadherin alpha 4 [Source:HGNC Symbol;Acc:HGNC:8670]

Gene Synonyms

CNR1, CNRN1, CRNR1, PCDH-ALPHA4

Location

Chromosome 5: 140,807,037-141,012,347 forward strand.

GRCh38:CM000667.2

View alleles of this gene on alternative sequences

About this gene

This gene has 4 transcripts (splice variants), 1 gene allele, 29 orthologues and 61 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000530339.2	PCDHA4-202	5374	947aa	ENSP00000435300.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS54916	Q9UN74-1	NM_018907.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000618834.1	PCDHA4-203	10557	798aa	ENSP00000481220.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		Q9UN74-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,
ENST00000512229.6	PCDHA4-201	4163	901aa	ENSP00000423470.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding		D6RA20	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000672575.1	PCDHA4-204	2808	806aa	ENSP00000500758.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A5F9ZHY0	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,

Gene: PCDHA4 ENSG00000204967

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Gene: PCDHA4 ENSG00000204967

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