Gene: NOBOX ENSG00000106410

Description

NOBOX oogenesis homeobox [Source:HGNC Symbol;Acc:HGNC:22448]

Gene Synonyms

OG2, OG2X

Location

Chromosome 7: 144,397,240-144,410,227 reverse strand.

GRCh38:CM000669.2

View alleles of this gene on alternative sequences

About this gene

This gene has 4 transcripts (splice variants), 1 gene allele, 145 orthologues, 50 paralogues and is associated with 2 phenotypes.

Transcripts

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Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000467773.1	NOBOX-201	2076	691aa	ENSP00000419457.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS47736	O60393-1	NM_001080413.3	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000483238.5	NOBOX-202	1980	659aa	ENSP00000419565.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		O60393-2	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS ALT2, TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5,
ENST00000645489.1	NOBOX-204	1725	574aa	ENSP00000496732.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8Y8C8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P2,
ENST00000643164.1	NOBOX-203	902	300aa	ENSP00000495343.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A2R8Y683	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete,

Gene: NOBOX ENSG00000106410

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Gene: NOBOX ENSG00000106410

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