Summary
- Splice variants
- Transcript comparison
- Gene alleles
Sequence
- Secondary Structure
Comparative Genomics
- Genomic alignments
- Gene tree
- Gene gain/loss tree
- Orthologues
- Paralogues
Ontologies
- GO: Molecular function
- GO: Cellular component
- GO: Biological process
Phenotypes
Genetic Variation
Gene expression
Pathway
Molecular interactions
Regulation
External references
Supporting evidence
ID History
- Gene history

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Gene: LINC00654 ENSG00000205181

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Description

long intergenic non-protein coding RNA 654 [Source:HGNC Symbol;Acc:HGNC:27154]

Location

Chromosome 20: 5,482,736-5,526,709 reverse strand.

GRCh38:CM000682.2

About this gene

This gene has 9 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	RefSeq Match	Flags
ENST00000650928.1	LINC00654-203	1856	No protein	-	lncRNA		-	A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000379053.4	LINC00654-201	6113	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000664106.1	LINC00654-208	2796	No protein	-	lncRNA		-	-
ENST00000589201.2	LINC00654-202	2001	No protein	-	lncRNA		-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3,
ENST00000665765.1	LINC00654-209	1607	No protein	-	lncRNA		-	-
ENST00000654011.2	LINC00654-204	1378	No protein	-	lncRNA		-	-
ENST00000660858.1	LINC00654-205	1002	No protein	-	lncRNA		-	-
ENST00000663299.1	LINC00654-207	931	No protein	-	lncRNA		-	-
ENST00000661996.1	LINC00654-206	809	No protein	-	lncRNA		-	-

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Summary

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