HLA complex group 18 [Source:HGNC Symbol;Acc:HGNC:31337]
EM:AB014087.1, FLJ25550, FLJ31598
Chromosome 6: 30,286,690-30,327,382 reverse strand.
GRCh38:CM000668.2
View alleles of this gene on alternative sequences
This gene has 42 transcripts (splice variants) and 1 gene allele.
| Transcript ID | Name | bp | Protein | Translation ID | Biotype | CCDS | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|
| ENST00000670397.1 | HCG18-268 | 3040 | No protein | - | lncRNA | - | A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, | |
| ENST00000664861.1 | HCG18-261 | 7267 | No protein | - | lncRNA | - | - | |
| ENST00000659132.1 | HCG18-257 | 7230 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000653541.1 | HCG18-250 | 7199 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000657247.1 | HCG18-254 | 7011 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000668974.1 | HCG18-265 | 6734 | No protein | - | lncRNA | - | - | |
| ENST00000654915.1 | HCG18-251 | 6547 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000658695.1 | HCG18-256 | 6537 | No protein | - | lncRNA | - | - | |
| ENST00000660593.1 | HCG18-260 | 6491 | No protein | - | lncRNA | - | - | |
| ENST00000426882.6 | HCG18-235 | 5050 | No protein | - | lncRNA | - | TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1, | |
| ENST00000666294.1 | HCG18-263 | 4929 | No protein | - | lncRNA | - | - | |
| ENST00000444126.5 | HCG18-237 | 4605 | No protein | - | lncRNA | - | TSL 5: A transcript where no single transcript supports the model structure. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:5, | |
| ENST00000602290.2 | HCG18-241 | 4601 | No protein | - | lncRNA | - | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000449544.6 | HCG18-238 | 4518 | No protein | - | lncRNA | - | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000454129.5 | HCG18-239 | 4433 | No protein | - | lncRNA | - | TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, | |
| ENST00000654996.1 | HCG18-252 | 4356 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000657595.1 | HCG18-255 | 4021 | No protein | - | lncRNA | - | - | |
| ENST00000653301.1 | HCG18-249 | 4017 | No protein | - | lncRNA | - | - | |
| ENST00000602861.6 | HCG18-248 | 3981 | No protein | - | lncRNA | - | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000665953.1 | HCG18-262 | 3898 | No protein | - | lncRNA | - | - | |
| ENST00000670071.1 | HCG18-267 | 3812 | No protein | - | lncRNA | - | - | |
| ENST00000659563.1 | HCG18-258 | 3639 | No protein | - | lncRNA | - | - | |
| ENST00000659836.1 | HCG18-259 | 3406 | No protein | - | lncRNA | - | - | |
| ENST00000602319.1 | HCG18-242 | 3342 | No protein | - | lncRNA | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000669374.1 | HCG18-266 | 3028 | No protein | - | lncRNA | - | - | |
| ENST00000602516.1 | HCG18-244 | 2890 | No protein | - | lncRNA | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000668243.1 | HCG18-264 | 2862 | No protein | - | lncRNA | - | - | |
| ENST00000656629.1 | HCG18-253 | 2390 | No protein | - | lncRNA | - | - | |
| ENST00000687815.1 | HCG18-272 | 2367 | No protein | - | lncRNA | - | - | |
| ENST00000602698.7 | HCG18-247 | 2284 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000438412.6 | HCG18-236 | 2270 | No protein | - | lncRNA | - | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000454269.7 | HCG18-240 | 2168 | No protein | - | lncRNA | - | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000602591.1 | HCG18-246 | 1976 | No protein | - | lncRNA | - | TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA, | |
| ENST00000412685.9 | HCG18-233 | 1968 | No protein | - | lncRNA | - | TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, | |
| ENST00000687430.1 | HCG18-270 | 1639 | No protein | - | lncRNA | - | The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, | |
| ENST00000602550.6 | HCG18-245 | 1612 | No protein | - | lncRNA | - | TSL 4: A transcript where the best supporting EST is flagged as suspect The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:4, | |
| ENST00000686575.2 | HCG18-269 | 1540 | No protein | - | lncRNA | - | - | |
| ENST00000691282.1 | HCG18-273 | 1518 | No protein | - | lncRNA | - | - | |
| ENST00000702209.1 | HCG18-274 | 1050 | No protein | - | lncRNA | - | - | |
| ENST00000413358.6 | HCG18-234 | 916 | No protein | - | lncRNA | - | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, | |
| ENST00000687471.1 | HCG18-271 | 736 | No protein | - | lncRNA | - | - | |
| ENST00000602498.1 | HCG18-243 | 327 | No protein | - | lncRNA | - | TSL 3: A transcript where the only support is from a single EST The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:3, |
