Human (GRCh38.p14)
Description

CLN3 lysosomal/endosomal transmembrane protein, battenin [Source:HGNC Symbol;Acc:HGNC:2074]

Gene Synonyms

BTN1, BTS, JNCL

Location

Chromosome 16: 28,474,111-28,495,575 reverse strand.

GRCh38:CM000678.2

About this gene

This gene has 62 transcripts (splice variants), 193 orthologues and is associated with 5 phenotypes.

Transcript IDNamebpProteinTranslation IDBiotypeCCDSUniProt MatchRefSeq MatchFlags
ENST00000636147.2CLN3-2431685438aaENSP00000490105.1
 
Protein coding
CCDS10632Q13286-1 NM_001042432.2MANE SelectEnsembl CanonicalGENCODE basicAPPRIS P1TSL:1
ENST00000569430.7CLN3-2385765438aaENSP00000454229.1
 
Protein coding
CCDS10632Q13286-1 -GENCODE basicAPPRIS P1TSL:5
ENST00000359984.12CLN3-2051876438aaENSP00000353073.9
 
Protein coding
CCDS10632Q13286-1 -GENCODE basicAPPRIS P1TSL:1
ENST00000360019.8CLN3-2061841414aaENSP00000353116.3
 
Protein coding
CCDS73855Q13286-7 -GENCODE basicTSL:2
ENST00000357857.14CLN3-2041720384aaENSP00000350523.9
 
Protein coding
CCDS73854B4DFF3 -GENCODE basicTSL:2
ENST00000333496.14CLN3-2011608414aaENSP00000329171.9
 
Protein coding
CCDS73855Q13286-7 -GENCODE basicTSL:5
ENST00000357806.11CLN3-2031469339aaENSP00000350457.7
 
Protein coding
Q13286-6 -GENCODE basicTSL:1
ENST00000567963.6CLN3-2291452384aaENSP00000455387.2
 
Protein coding
CCDS73854B4DFF3 -GENCODE basicTSL:5
ENST00000395653.9CLN3-2071430285aaENSP00000379014.5
 
Protein coding
F6TI76 -GENCODE basicTSL:5
ENST00000565316.6CLN3-2161318421aaENSP00000456117.1
 
Protein coding
Q13286-3 -GENCODE basicTSL:1
ENST00000637100.1CLN3-2541284370aaENSP00000490394.1
 
Protein coding
A0A1B0GV71 -GENCODE basicTSL:5
ENST00000636228.1CLN3-2451224336aaENSP00000489627.1
 
Protein coding
O95086 -GENCODE basicTSL:1
ENST00000355477.10CLN3-2021173390aaENSP00000347660.7
 
Protein coding
Q13286-2 -GENCODE basicTSL:1
ENST00000635973.1CLN3-2421084269aaENSP00000490363.1
 
Protein coding
A0A1B0GV41 -TSL:5CDS 3' incomplete
ENST00000568443.2CLN3-232969228aaENSP00000454899.2
 
Protein coding
H3BNK7 -TSL:3CDS 3' incomplete
ENST00000568497.6CLN3-23575828aaENSP00000456414.2
 
Protein coding
H3BRU8 -TSL:3CDS 3' incomplete
ENST00000565778.6CLN3-219688167aaENSP00000458015.1
 
Protein coding
O95090 -TSL:1CDS 3' incomplete
ENST00000565688.5CLN3-218650176aaENSP00000456122.1
 
Protein coding
H3BR84 -TSL:3CDS 3' incomplete
ENST00000568558.6CLN3-236634176aaENSP00000455603.2
 
Protein coding
H3BQ48 -TSL:5CDS 3' incomplete
ENST00000567804.1CLN3-22855774aaENSP00000455365.1
 
Protein coding
H3BPL0 -TSL:4CDS 3' incomplete
ENST00000637107.1CLN3-2551946182aaENSP00000490248.1
 
Nonsense mediated decay
A0A1B0GUU4 -TSL:5
ENST00000637184.1CLN3-2571753363aaENSP00000489952.1
 
Nonsense mediated decay
A0A1B0GW34 -TSL:5
ENST00000637871.1CLN3-2611606131aaENSP00000490670.1
 
Nonsense mediated decay
Q9UP10 -TSL:5
ENST00000637578.1CLN3-258157777aaENSP00000490206.1
 
Nonsense mediated decay
A0A1B0GUB1 -TSL:2
ENST00000636172.1CLN3-2441536131aaENSP00000490505.1
 
Nonsense mediated decay
Q9UP10 -TSL:2
ENST00000635861.1CLN3-240140477aaENSP00000490034.1
 
Nonsense mediated decay
A0A1B0GUB1 -TSL:5
ENST00000637699.1CLN3-2601228181aaENSP00000490049.1
 
Nonsense mediated decay
Q9UBD8 -TSL:2
ENST00000565140.5CLN3-2141225181aaENSP00000455342.1
 
Nonsense mediated decay
Q9UBD8 -TSL:2
ENST00000628023.3CLN3-239118382aaENSP00000486178.1
 
Nonsense mediated decay
A0A0D9SF04 -TSL:5
ENST00000568422.6CLN3-2311168181aaENSP00000455549.2
 
Nonsense mediated decay
Q9UBD8 -TSL:5
ENST00000569030.5CLN3-2371109253aaENSP00000454680.1
 
Nonsense mediated decay
Q13286-5 -TSL:2
ENST00000566057.5CLN3-221931105aaENSP00000456693.1
 
Nonsense mediated decay
Q9UBH5 -TSL:1
ENST00000564091.6CLN3-211790218aaENSP00000454466.2
 
Nonsense mediated decay
H3BMN4 -TSL:5CDS 5' incomplete
ENST00000567495.6CLN3-227769155aaENSP00000456013.2
 
Nonsense mediated decay
H3BR00 -TSL:5
ENST00000637985.1CLN3-26276452aaENSP00000490932.1
 
Nonsense mediated decay
A0A1B0GWH8 -TSL:5
ENST00000561505.2CLN3-20849553aaENSP00000457615.2
 
Nonsense mediated decay
H3BUF8 -TSL:1
ENST00000636355.1CLN3-247975No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000567160.1CLN3-226616No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000565236.1CLN3-215582No protein-
 
Protein coding CDS not defined
--TSL:3
ENST00000566816.1CLN3-224570No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000637110.1CLN3-256565No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000566472.1CLN3-223551No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000566040.1CLN3-220544No protein-
 
Protein coding CDS not defined
--TSL:4
ENST00000637686.1CLN3-259533No protein-
 
Protein coding CDS not defined
--TSL:5
ENST00000565047.1CLN3-213461No protein-
 
Protein coding CDS not defined
--TSL:1
ENST00000563874.5CLN3-2103081No protein-
 
Retained intron
--TSL:2
ENST00000636977.1CLN3-2522969No protein-
 
Retained intron
--TSL:5
ENST00000636853.1CLN3-2502289No protein-
 
Retained intron
--TSL:5
ENST00000636839.1CLN3-2492018No protein-
 
Retained intron
--TSL:5
ENST00000568076.6CLN3-2301968No protein-
 
Retained intron
--TSL:5
ENST00000561689.6CLN3-2091957No protein-
 
Retained intron
--TSL:2
ENST00000635958.1CLN3-2411837No protein-
 
Retained intron
--TSL:5
ENST00000637050.1CLN3-2531684No protein-
 
Retained intron
--TSL:5
ENST00000636907.1CLN3-2511679No protein-
 
Retained intron
--TSL:2
ENST00000568452.6CLN3-2331616No protein-
 
Retained intron
--TSL:5
ENST00000566083.6CLN3-2221409No protein-
 
Retained intron
--TSL:2
ENST00000566824.6CLN3-2251326No protein-
 
Retained intron
--TSL:5
ENST00000636351.1CLN3-2461292No protein-
 
Retained intron
--TSL:5
ENST00000564574.5CLN3-2121159No protein-
 
Retained intron
--TSL:2
ENST00000568472.6CLN3-2341011No protein-
 
Retained intron
--TSL:3
ENST00000636685.1CLN3-248801No protein-
 
Retained intron
--TSL:5
ENST00000565354.5CLN3-217759No protein-
 
Retained intron
--TSL:5