Gene: APBA1 ENSG00000107282

Description

amyloid beta precursor protein binding family A member 1 [Source:HGNC Symbol;Acc:HGNC:578]

Gene Synonyms

D9S411E, MINT1, X11

Location

Chromosome 9: 69,427,532-69,672,371 reverse strand.

GRCh38:CM000671.2

View alleles of this gene on alternative sequences

About this gene

This gene has 4 transcripts (splice variants), 1 gene allele, 276 orthologues and 4 paralogues.

Transcripts

Show transcript tableHide transcript table

Transcript ID	Name	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
ENST00000265381.7	APBA1-201	6597	837aa	ENSP00000265381.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS6630	Q02410-1	NM_001163.4	The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select, A single transcript chosen for a gene which is the most conserved, most highly expressed, has the longest coding sequence and is represented in other key resources, such as NCBI and UniProt. This is defined in detail on http://www.ensembl.org/info/genome/genebuild/canonical.htmlEnsembl Canonical, The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic, APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS. APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene. APPRIS P1, TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:1,
ENST00000699288.1	APBA1-204	5306	452aa	ENSP00000514269.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A8V8TPS8	-	The GENCODE set is the gene set for human and mouse. GENCODE Basic is a subset of representative transcripts (splice variants).GENCODE basic,
ENST00000470082.2	APBA1-202	367	122aa	ENSP00000486435.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding		A0A0D9SFA9	-	TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:2, 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,
ENST00000628769.1	APBA1-203	4850	No protein	-	An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron		-	-	TSL NA: A transcript that was not analysed for TSL. The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript. TSL:NA,

Gene: APBA1 ENSG00000107282

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Gene: APBA1 ENSG00000107282

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